recipe bioconductor-cancersubtypes

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CancerSubtypes.html

License:

GPL (>= 2)

Recipe:

/bioconductor-cancersubtypes/meta.yaml

Links:

biotools: cancersubtypes, doi: 10.1038/nmeth.3252

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

package bioconductor-cancersubtypes

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-consensusclusterplus >=1.62.0,<1.63.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-limma >=3.54.0,<3.55.0

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-nmf

• r-sigclust

• r-survival

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cancersubtypes

and update with:

conda update bioconductor-cancersubtypes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cancersubtypes:<tag>

(see bioconductor-cancersubtypes/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cancersubtypes/README.html)