recipe bioconductor-cancersubtypes

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Homepage

https://bioconductor.org/packages/3.12/bioc/html/CancerSubtypes.html

License

GPL (>= 2)

Recipe

/bioconductor-cancersubtypes/meta.yaml

Links

biotools: cancersubtypes, doi: 10.1038/nmeth.3252

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

package bioconductor-cancersubtypes

Versions

1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends

• bioconductor-consensusclusterplus >=1.54.0,<1.55.0

• bioconductor-impute >=1.64.0,<1.65.0

• bioconductor-limma >=3.46.0,<3.47.0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-icluster

• r-nmf

• r-sigclust

• r-snftool

• r-survival

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cancersubtypes

and update with:

conda update bioconductor-cancersubtypes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cancersubtypes:<tag>

(see bioconductor-cancersubtypes/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cancersubtypes/README.html)