-
recipe
bioconductor-cancersubtypes
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/CancerSubtypes.html
- License
GPL (>= 2)
- Recipe
- Links
biotools: cancersubtypes, doi: 10.1038/nmeth.3252
CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.
-
package
bioconductor-cancersubtypes
¶ -
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
- Depends
bioconductor-consensusclusterplus
>=1.54.0,<1.55.0
bioconductor-impute
>=1.64.0,<1.65.0
bioconductor-limma
>=3.46.0,<3.47.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cancersubtypes
and update with:
conda update bioconductor-cancersubtypes
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cancersubtypes:<tag>
(see bioconductor-cancersubtypes/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cancersubtypes/README.html)