recipe bioconductor-cbaf

Automated functions for comparing various omic data from cbioportal.org

Homepage

https://bioconductor.org/packages/3.11/bioc/html/cbaf.html

License

Artistic-2.0

Recipe

/bioconductor-cbaf/meta.yaml

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

package bioconductor-cbaf

Versions

1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-biocfilecache >=1.10.0,<1.11.0

• bioconductor-genefilter >=1.68.0,<1.69.0

• r-base >=3.6,<3.7.0a0

• r-cgdsr

• r-gplots

• r-rcolorbrewer

• r-xlsx

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cbaf

and update with:

conda update bioconductor-cbaf

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbaf:<tag>

(see bioconductor-cbaf/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cbaf/README.html)