recipe bioconductor-cbaf

Automated functions for comparing various omic data from cbioportal.org

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cbaf.html

License:

Artistic-2.0

Recipe:

/bioconductor-cbaf/meta.yaml

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

package bioconductor-cbaf

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.1-0,  1.12.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-cbioportaldata >=2.10.0,<2.11.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• r-base >=4.2,<4.3.0a0

• r-gplots

• r-openxlsx

• r-rcolorbrewer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cbaf

and update with:

conda update bioconductor-cbaf

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cbaf:<tag>

(see bioconductor-cbaf/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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