- recipe bioconductor-cbaf
Automated functions for comparing various omic data from cbioportal.org
- Homepage:
- License:
Artistic-2.0
- Recipe:
This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
- package bioconductor-cbaf¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends:
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-cbioportaldata
>=2.10.0,<2.11.0
bioconductor-genefilter
>=1.80.0,<1.81.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cbaf
and update with:
conda update bioconductor-cbaf
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cbaf:<tag>
(see bioconductor-cbaf/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cbaf/README.html)