recipe bioconductor-celaref

After the clustering step of a single-cell RNAseq experiment, this package aims to suggest labels/cell types for the clusters, on the basis of similarity to a reference dataset. It requires a table of read counts per cell per gene, and a list of the cells belonging to each of the clusters, (for both test and reference data).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/celaref.html

License

GPL-3

Recipe

/bioconductor-celaref/meta.yaml

package bioconductor-celaref

(downloads) docker_bioconductor-celaref

Versions

1.2.0-1, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-celaref

and update with:

conda update bioconductor-celaref

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celaref:<tag>

(see bioconductor-celaref/tags for valid values for <tag>)