recipe bioconductor-celldex

Reference Index for Cell Types

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/celldex.html

License:

GPL-3

Recipe:

/bioconductor-celldex/meta.yaml

Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.

package bioconductor-celldex

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-celldex

and update with:

conda update bioconductor-celldex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-celldex:<tag>

(see bioconductor-celldex/tags for valid values for <tag>)

Download stats

Link to this page

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