-
recipe
bioconductor-cellscore¶ Tool for Evaluation of Cell Identity from Transcription Profiles
- Homepage
https://bioconductor.org/packages/3.11/bioc/html/CellScore.html
- License
GPL-3
- Recipe
The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.
-
package
bioconductor-cellscore¶ 
- Versions
1.8.0-0, 1.6.0-0, 1.4.0-1, 1.2.0-0
- Depends
bioconductor-biobase >=2.48.0,<2.49.0
r-base >=4.0,<4.1.0a0
r-gplots >=3.0.1
r-lsa >=0.73.1
r-rcolorbrewer >=1.1-2
r-squash >=1.0.8
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cellscore
and update with:
conda update bioconductor-cellscore
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellscore:<tag>
(see bioconductor-cellscore/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellscore/README.html)