recipe bioconductor-cellscore

Tool for Evaluation of Cell Identity from Transcription Profiles






The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.

package bioconductor-cellscore

(downloads) docker_bioconductor-cellscore


1.8.0-0, 1.6.0-0, 1.4.0-1, 1.2.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellscore

and update with:

conda update bioconductor-cellscore

or use the docker container:

docker pull<tag>

(see bioconductor-cellscore/tags for valid values for <tag>)