recipe bioconductor-cemitool

Co-expression Modules identification Tool

Homepage

https://bioconductor.org/packages/3.10/bioc/html/CEMiTool.html

License

GPL-3

Recipe

/bioconductor-cemitool/meta.yaml

The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.

package bioconductor-cemitool

(downloads) docker_bioconductor-cemitool

Versions

1.10.0-0, 1.8.3-0, 1.6.10-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cemitool

and update with:

conda update bioconductor-cemitool

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cemitool:<tag>

(see bioconductor-cemitool/tags for valid values for <tag>)