recipe bioconductor-cepo

Cepo for the identification of differentially stable genes

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/Cepo.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-cepo/meta.yaml

Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression.

package bioconductor-cepo

Versions:

1.0.0-0

Depends:

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-patchwork

• r-reshape2

• r-rlang

Required By:

• bioconductor-scclassify

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cepo

and update with:

conda update bioconductor-cepo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cepo:<tag>

(see bioconductor-cepo/tags for valid values for <tag>)

Download stats

Link to this page

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