recipe bioconductor-cexor

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CexoR.html

License

Artistic-2.0 | GPL-2 + file LICENSE

Recipe

/bioconductor-cexor/meta.yaml

Links

biotools: cexor, doi: 10.14806/ej.21.0.837

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.

package bioconductor-cexor

(downloads) docker_bioconductor-cexor

Versions

1.26.0-01.24.0-01.22.0-11.20.0-01.18.0-01.16.0-01.14.0-01.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cexor

and update with:

conda update bioconductor-cexor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cexor:<tag>

(see bioconductor-cexor/tags for valid values for <tag>)