recipe bioconductor-cexor

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CexoR.html

License:

Artistic-2.0 | GPL-2 + file LICENSE

Recipe:

/bioconductor-cexor/meta.yaml

Links:

biotools: cexor, doi: 10.14806/ej.21.0.837

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.

package bioconductor-cexor

(downloads) docker_bioconductor-cexor

Versions:
1.32.0-01.28.0-11.28.0-01.26.0-01.24.0-01.22.0-11.20.0-01.18.0-01.16.0-0

1.32.0-01.28.0-11.28.0-01.26.0-01.24.0-01.22.0-11.20.0-01.18.0-01.16.0-01.14.0-01.8.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cexor

and update with:

conda update bioconductor-cexor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cexor:<tag>

(see bioconductor-cexor/tags for valid values for <tag>)

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