recipe bioconductor-cghnormaliter

Normalization of array CGH data with imbalanced aberrations.

Homepage

https://bioconductor.org/packages/3.13/bioc/html/CGHnormaliter.html

License

GPL (>= 3)

Recipe

/bioconductor-cghnormaliter/meta.yaml

Links

biotools: cghnormaliter, doi: 10.1186/1471-2164-10-401

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

package bioconductor-cghnormaliter

Versions

1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-cghbase >=1.52.0,<1.53.0

• bioconductor-cghcall >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cghnormaliter

and update with:

conda update bioconductor-cghnormaliter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cghnormaliter:<tag>

(see bioconductor-cghnormaliter/tags for valid values for <tag>)

Link to this page

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