- recipe bioconductor-cghnormaliter
Normalization of array CGH data with imbalanced aberrations.
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/CGHnormaliter.html
- License
GPL (>= 3)
- Recipe
- Links
biotools: cghnormaliter, doi: 10.1186/1471-2164-10-401
Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
- package bioconductor-cghnormaliter¶
-
- Versions
1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-cghbase
>=1.54.0,<1.55.0
bioconductor-cghcall
>=2.56.0,<2.57.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cghnormaliter
and update with:
conda update bioconductor-cghnormaliter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cghnormaliter:<tag>
(see bioconductor-cghnormaliter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cghnormaliter/README.html)