recipe bioconductor-chic

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIC.html

License

GPL-2

Recipe

/bioconductor-chic/meta.yaml

package bioconductor-chic

(downloads) docker_bioconductor-chic

Versions

1.4.0-1, 1.2.0-1, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chic

and update with:

conda update bioconductor-chic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chic:<tag>

(see bioconductor-chic/tags for valid values for <tag>)