recipe bioconductor-chimeraviz

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chimeraviz.html

License

Artistic-2.0

Recipe

/bioconductor-chimeraviz/meta.yaml

package bioconductor-chimeraviz

(downloads) docker_bioconductor-chimeraviz

Versions

1.8.0-0, 1.6.2-0, 1.0.4-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-annotationfilter

>=1.6.0,<1.7.0

Depends bioconductor-biocstyle

>=2.10.0,<2.11.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-ensembldb

>=2.6.0,<2.7.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.mm.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-rgraphviz

>=2.26.0,<2.27.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-argumentcheck

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-dplyr

Depends r-dt

Depends r-plyr

Depends r-rcircos

Depends r-rcolorbrewer

Depends r-rmarkdown

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimeraviz

and update with:

conda update bioconductor-chimeraviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimeraviz:<tag>

(see bioconductor-chimeraviz/tags for valid values for <tag>)