recipe bioconductor-chipcomp

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPComp.html

License

GPL

Recipe

/bioconductor-chipcomp/meta.yaml

Links

biotools: chipcomp

package bioconductor-chipcomp

(downloads) docker_bioconductor-chipcomp

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.0.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-bsgenome.hsapiens.ucsc.hg19

>=1.4.0,<1.5.0

Depends bioconductor-bsgenome.mmusculus.ucsc.mm9

>=1.4.0,<1.5.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipcomp

and update with:

conda update bioconductor-chipcomp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipcomp:<tag>

(see bioconductor-chipcomp/tags for valid values for <tag>)