recipe bioconductor-chipenrich

ChIP-Enrich performs gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chipenrich.html

License

GPL-3

Recipe

/bioconductor-chipenrich/meta.yaml

package bioconductor-chipenrich

(downloads) docker_bioconductor-chipenrich

Versions

2.6.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-chipenrich.data

>=2.6.0,<2.7.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-org.dm.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.dr.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.mm.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.rn.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-lattice

Depends r-latticeextra

Depends r-mgcv

Depends r-plyr

Depends r-rms

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipenrich

and update with:

conda update bioconductor-chipenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipenrich:<tag>

(see bioconductor-chipenrich/tags for valid values for <tag>)