recipe bioconductor-chipsim

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPsim.html

License

GPL (>= 2)

Recipe

/bioconductor-chipsim/meta.yaml

Links

biotools: chipsim, doi: 10.1038/nmeth.3252

package bioconductor-chipsim

(downloads) docker_bioconductor-chipsim

Versions

1.36.0-0, 1.34.0-0, 1.32.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-shortread

>=1.40.0,<1.41.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipsim

and update with:

conda update bioconductor-chipsim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipsim:<tag>

(see bioconductor-chipsim/tags for valid values for <tag>)