recipe bioconductor-chromhmmdata

Chromosome Size, Coordinates and Anchor Files






Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

package bioconductor-chromhmmdata

(downloads) docker_bioconductor-chromhmmdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chromhmmdata

and update with::

   mamba update bioconductor-chromhmmdata

To create a new environment, run:

mamba create --name myenvname bioconductor-chromhmmdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-chromhmmdata/tags`_ for valid values for ``<tag>``)

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