recipe bioconductor-chromhmmdata

Chromosome Size, Coordinates and Anchor Files

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/chromhmmData.html

License:

GPL-3

Recipe:

/bioconductor-chromhmmdata/meta.yaml

Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

package bioconductor-chromhmmdata

versions:

0.99.2-4,  0.99.2-3,  0.99.2-2,  0.99.2-1,  0.99.2-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chromhmmdata

and update with::

   mamba update bioconductor-chromhmmdata

To create a new environment, run:

mamba create --name myenvname bioconductor-chromhmmdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-chromhmmdata:<tag>

(see `bioconductor-chromhmmdata/tags`_ for valid values for ``<tag>``)

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Link to this page

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