recipe bioconductor-cleanupdtseq

This package uses the Naive Bayes classifier (from e1071) to assign probability values to putative polyadenylation sites (pA sites) based on training data from zebrafish. This will allow the user to separate true, biologically relevant pA sites from false, oligodT primed pA sites.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cleanUpdTSeq.html

License

GPL-2

Recipe

/bioconductor-cleanupdtseq/meta.yaml

Links

biotools: cleanupdtseq

package bioconductor-cleanupdtseq

(downloads) docker_bioconductor-cleanupdtseq

Versions

1.20.0-0, 1.18.0-0, 1.16.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-bsgenome.drerio.ucsc.danrer7

>=1.4.0,<1.5.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-e1071

Depends r-seqinr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cleanupdtseq

and update with:

conda update bioconductor-cleanupdtseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cleanupdtseq:<tag>

(see bioconductor-cleanupdtseq/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cleanupdtseq/README.html)