recipe bioconductor-cleanupdtseq

cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/cleanUpdTSeq.html

License

GPL-2

Recipe

/bioconductor-cleanupdtseq/meta.yaml

Links

biotools: cleanupdtseq

This package implements a Naive Bayes classifier for accurately differentiating true polyadenylation sites (pA sites) from oligo(dT)-mediated 3' end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq by filtering out false polyadenylation sites, mainly due to oligo(dT)-mediated internal priming during reverse transcription. The classifer is highly accurate and outperforms other heuristic methods.

package bioconductor-cleanupdtseq

(downloads) docker_bioconductor-cleanupdtseq

Versions

1.30.0-01.28.0-11.28.0-01.26.0-01.24.0-01.22.2-01.20.0-01.18.0-01.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cleanupdtseq

and update with:

conda update bioconductor-cleanupdtseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cleanupdtseq:<tag>

(see bioconductor-cleanupdtseq/tags for valid values for <tag>)