-
recipe
bioconductor-cleanupdtseq
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/cleanUpdTSeq.html
- License
GPL-2
- Recipe
- Links
biotools: cleanupdtseq
This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.
-
package
bioconductor-cleanupdtseq
¶ -
- Versions
1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.2-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-bsgenome
>=1.58.0,<1.59.0
bioconductor-bsgenome.drerio.ucsc.danrer7
>=1.4.0,<1.5.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.24.0,<2.25.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cleanupdtseq
and update with:
conda update bioconductor-cleanupdtseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cleanupdtseq:<tag>
(see bioconductor-cleanupdtseq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cleanupdtseq/README.html)