recipe bioconductor-clomial

Infers clonal composition of a tumor

Homepage

https://bioconductor.org/packages/3.12/bioc/html/Clomial.html

License

GPL (>= 2)

Recipe

/bioconductor-clomial/meta.yaml

Links

biotools: clomial

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

package bioconductor-clomial

Versions

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.1-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-matrixstats

• r-permute

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clomial

and update with:

conda update bioconductor-clomial

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clomial:<tag>

(see bioconductor-clomial/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clomial/README.html)