-
recipe
bioconductor-clustifyr
Classifier for Single-cell RNA-seq Using Cell Clusters
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/clustifyr.html
- License
MIT + file LICENSE
- Recipe
Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.
-
package
bioconductor-clustifyr
¶ -
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-fgsea
>=1.16.0,<1.17.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-singlecellexperiment
>=1.12.0,<1.13.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-clustifyr
and update with:
conda update bioconductor-clustifyr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clustifyr:<tag>
(see bioconductor-clustifyr/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clustifyr/README.html)