recipe bioconductor-clustifyr

Classifier for Single-cell RNA-seq Using Cell Clusters

Homepage

https://bioconductor.org/packages/3.12/bioc/html/clustifyr.html

License

MIT + file LICENSE

Recipe

/bioconductor-clustifyr/meta.yaml

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

package bioconductor-clustifyr

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-fgsea >=1.16.0,<1.17.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-singlecellexperiment >=1.12.0,<1.13.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• r-base >=4.0,<4.1.0a0

• r-cowplot

• r-dplyr

• r-entropy

• r-ggplot2

• r-httr

• r-matrix

• r-matrixstats

• r-proxy

• r-readr

• r-rlang

• r-scales

• r-stringr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clustifyr

and update with:

conda update bioconductor-clustifyr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clustifyr:<tag>

(see bioconductor-clustifyr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clustifyr/README.html)