bioconductor-cnanorm

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Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a “discrete” normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

Home http://bioconductor.org/packages/3.6/bioc/html/CNAnorm.html
Versions 1.22.1, 1.24.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cnanorm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cnanorm

and update with:

conda update bioconductor-cnanorm

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cnanorm.