recipe bioconductor-cnanorm

A normalization method for Copy Number Aberration in cancer samples

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CNAnorm.html

License

GPL-2

Recipe

/bioconductor-cnanorm/meta.yaml

Links

biotools: cnanorm

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

package bioconductor-cnanorm

(downloads) docker_bioconductor-cnanorm

Versions

1.34.0-01.32.0-01.30.0-11.30.0-01.28.0-01.26.0-01.24.0-01.22.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cnanorm

and update with:

conda update bioconductor-cnanorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnanorm:<tag>

(see bioconductor-cnanorm/tags for valid values for <tag>)