recipe bioconductor-cner

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CNEr.html

License

GPL-2 | file LICENSE

Recipe

/bioconductor-cner/meta.yaml

Links

biotools: cner, doi: 10.1038/nmeth.3252

package bioconductor-cner

(downloads) docker_bioconductor-cner

Versions

1.18.1-0, 1.16.1-0, 1.14.0-0, 1.12.1-0, 1.10.2-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dbi

>=0.7

Depends r-ggplot2

>=2.1.0

Depends r-powerlaw

>=0.60.3

Depends r-r.utils

>=2.3.0

Depends r-readr

>=0.2.2

Depends r-reshape2

>=1.4.1

Depends r-rsqlite

>=0.11.4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cner

and update with:

conda update bioconductor-cner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cner:<tag>

(see bioconductor-cner/tags for valid values for <tag>)