- recipe bioconductor-cnvfilter
Identifies false positives of CNV calling tools by using SNV calls
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CNVfilteR.html
- License:
Artistic-2.0
- Recipe:
CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.
- package bioconductor-cnvfilter¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.1-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-copynumberplots
>=1.14.0,<1.15.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-karyoploter
>=1.24.0,<1.25.0
bioconductor-regioner
>=1.30.0,<1.31.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cnvfilter
and update with:
conda update bioconductor-cnvfilter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cnvfilter:<tag>
(see bioconductor-cnvfilter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cnvfilter/README.html)