- recipe bioconductor-cnvranger
Summarization and expression/phenotype association of CNV ranges
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CNVRanger.html
- License:
Artistic-2.0
- Recipe:
The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.
- package bioconductor-cnvranger¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.1-0
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-gdsarray
>=1.18.0,<1.19.0
bioconductor-gdsfmt
>=1.34.0,<1.35.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-raggedexperiment
>=1.22.0,<1.23.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-snprelate
>=1.32.0,<1.33.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cnvranger
and update with:
conda update bioconductor-cnvranger
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cnvranger:<tag>
(see bioconductor-cnvranger/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cnvranger/README.html)