recipe bioconductor-compartmap

Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq

Homepage

https://bioconductor.org/packages/3.13/bioc/html/compartmap.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-compartmap/meta.yaml

Compartmap performs direct inference of higher-order chromatin from scRNA-seq and scATAC-seq. This package implements a James-Stein estimator for computing single-cell level higher-order chromatin domains. Further, we utilize random matrix theory as a method to de-noise correlation matrices to achieve a similar "plaid-like" patterning as observed in Hi-C and scHi-C data.

package bioconductor-compartmap

(downloads) docker_bioconductor-compartmap

Versions

1.10.0-01.8.0-11.8.0-01.6.0-01.4.0-01.2.0-11.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compartmap

and update with:

conda update bioconductor-compartmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compartmap:<tag>

(see bioconductor-compartmap/tags for valid values for <tag>)

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