-
recipe
bioconductor-compcoder
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/compcodeR.html
- License
GPL (>= 2)
- Recipe
This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data. Finally, it provides convenient interfaces to several packages for performing the differential expression analysis. These can also be used as templates for setting up and running a user-defined differential analysis workflow within the framework of the package.
-
package
bioconductor-compcoder
¶ -
- Versions
1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.1-0
,1.18.0-0
- Depends
bioconductor-edger
>=3.32.0,<3.33.0
bioconductor-limma
>=3.46.0,<3.47.0
r-base
>=4.0,<4.1.0a0
r-knitr
>=1.2
r-lattice
>=0.16
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-compcoder
and update with:
conda update bioconductor-compcoder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-compcoder:<tag>
(see bioconductor-compcoder/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-compcoder/README.html)