recipe bioconductor-compepitools

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/compEpiTools.html

License

GPL

Recipe

/bioconductor-compepitools/meta.yaml

Links

biotools: compepitools

package bioconductor-compepitools

(downloads) docker_bioconductor-compepitools

Versions

1.16.0-0, 1.14.1-0, 1.12.0-0, 1.10.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-methylpipe

>=1.16.0,<1.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-topgo

>=2.34.0,<2.35.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gplots

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compepitools

and update with:

conda update bioconductor-compepitools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compepitools:<tag>

(see bioconductor-compepitools/tags for valid values for <tag>)