bioconductor-contibait

downloads

Using strand inheritance data from multiple single cells from the organism whose genome is to be assembled, contiBAIT can cluster unbridged contigs together into putative chromosomes, and order the contigs within those chromosomes.

Home http://bioconductor.org/packages/3.7/bioc/html/contiBAIT.html
Versions 1.8.0, 1.6.0
License BSD_2_clause + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-contibait
Links biotools: contibait, doi: 10.1093/bioinformatics/btx281

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-contibait

and update with:

conda update bioconductor-contibait

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-contibait.