bioconductor-copyhelper

downloads

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Home http://bioconductor.org/packages/3.7/data/experiment/html/CopyhelpeR.html
Versions 1.12.0, 1.10.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-copyhelper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-copyhelper

and update with:

conda update bioconductor-copyhelper

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-copyhelper.