recipe bioconductor-copyhelper

Helper files for CopywriteR

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/CopyhelpeR.html

License:

GPL-2

Recipe:

/bioconductor-copyhelper/meta.yaml

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

package bioconductor-copyhelper

Versions:

1.30.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.21.0-0,  1.20.0-0, 

1.30.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-data-packages >=20221109

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-copywriter

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-copyhelper

and update with:

conda update bioconductor-copyhelper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-copyhelper:<tag>

(see bioconductor-copyhelper/tags for valid values for <tag>)

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