- recipe bioconductor-copyhelper
Helper files for CopywriteR
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/CopyhelpeR.html
- License:
GPL-2
- Recipe:
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
- package bioconductor-copyhelper¶
-
- Versions:
1.30.0-0
,1.29.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.21.0-0
,1.20.0-0
,1.30.0-0
,1.29.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.21.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends:
bioconductor-data-packages
>=20221109
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-copyhelper
and update with:
conda update bioconductor-copyhelper
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-copyhelper:<tag>
(see bioconductor-copyhelper/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-copyhelper/README.html)