- recipe bioconductor-cordon
Codon Usage Analysis and Prediction of Gene Expressivity
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/coRdon.html
- License
Artistic-2.0
- Recipe
Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.
- package bioconductor-cordon¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.1-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.62.0,<2.63.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cordon
and update with:
conda update bioconductor-cordon
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cordon:<tag>
(see bioconductor-cordon/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cordon/README.html)