recipe bioconductor-cordon

Codon Usage Analysis and Prediction of Gene Expressivity

Homepage

https://bioconductor.org/packages/3.13/bioc/html/coRdon.html

License

Artistic-2.0

Recipe

/bioconductor-cordon/meta.yaml

Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.

package bioconductor-cordon

Versions

1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.1-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-purrr

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cordon

and update with:

conda update bioconductor-cordon

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cordon:<tag>

(see bioconductor-cordon/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cordon/README.html)