recipe bioconductor-countsimqc

Compare Characteristic Features of Count Data Sets

Homepage

https://bioconductor.org/packages/3.14/bioc/html/countsimQC.html

License

GPL (>=2)

Recipe

/bioconductor-countsimqc/meta.yaml

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

package bioconductor-countsimqc

Versions

1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-catools

• r-dplyr

• r-dt

• r-ggplot2

• r-randtests

• r-rmarkdown >=2.5

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-countsimqc

and update with:

conda update bioconductor-countsimqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-countsimqc:<tag>

(see bioconductor-countsimqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-countsimqc/README.html)