recipe bioconductor-countsimqc

Compare Characteristic Features of Count Data Sets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/countsimQC.html

License:

GPL (>=2)

Recipe:

/bioconductor-countsimqc/meta.yaml

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

package bioconductor-countsimqc

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-catools

• r-dplyr

• r-dt

• r-ggplot2

• r-ragg

• r-randtests

• r-rmarkdown >=2.5

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-countsimqc

and update with:

conda update bioconductor-countsimqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-countsimqc:<tag>

(see bioconductor-countsimqc/tags for valid values for <tag>)

Download stats

Link to this page

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