- recipe bioconductor-countsimqc
Compare Characteristic Features of Count Data Sets
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/countsimQC.html
- License:
GPL (>=2)
- Recipe:
countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.
- package bioconductor-countsimqc¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.1-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends:
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genefilter
>=1.80.0,<1.81.0
bioconductor-genomeinfodbdata
>=1.2.0,<1.3.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-rmarkdown
>=2.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-countsimqc
and update with:
conda update bioconductor-countsimqc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-countsimqc:<tag>
(see bioconductor-countsimqc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-countsimqc/README.html)