recipe bioconductor-crlmm

Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/crlmm.html

License:

Artistic-2.0

Recipe:

/bioconductor-crlmm/meta.yaml

Links:

biotools: crlmm

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

package bioconductor-crlmm

Versions:

1.56.0-0,  1.52.0-2,  1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0, 

1.56.0-0,  1.52.0-2,  1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0

Depends:

• bioconductor-affyio >=1.68.0,<1.69.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-illuminaio >=0.40.0,<0.41.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-oligoclasses >=1.60.0,<1.61.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-beanplot

• r-ellipse

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

• r-mvtnorm

• r-rcppeigen >=0.3.1.2.1

• r-vgam

Required By:

• bioconductor-vanillaice

• bioconductor-magar

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-crlmm

and update with:

conda update bioconductor-crlmm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crlmm:<tag>

(see bioconductor-crlmm/tags for valid values for <tag>)

Download stats

Link to this page

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