- recipe bioconductor-crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
- Homepage:
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: crlmm
Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.
- package bioconductor-crlmm¶
-
- Versions:
1.56.0-0
,1.52.0-2
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-0
,1.56.0-0
,1.52.0-2
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-0
- Depends:
bioconductor-affyio
>=1.68.0,<1.69.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-illuminaio
>=0.40.0,<0.41.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-oligoclasses
>=1.60.0,<1.61.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
r-rcppeigen
>=0.3.1.2.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-crlmm
and update with:
conda update bioconductor-crlmm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-crlmm:<tag>
(see bioconductor-crlmm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-crlmm/README.html)