- recipe bioconductor-crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: crlmm
Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.
- package bioconductor-crlmm¶
-
- Versions
1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.40.0-0
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-0
- Depends
bioconductor-affyio
>=1.64.0,<1.65.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-illuminaio
>=0.36.0,<0.37.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-oligoclasses
>=1.56.0,<1.57.0
bioconductor-preprocesscore
>=1.56.0,<1.57.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
r-rcppeigen
>=0.3.1.2.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-crlmm
and update with:
conda update bioconductor-crlmm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-crlmm:<tag>
(see bioconductor-crlmm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-crlmm/README.html)