recipe bioconductor-crlmm

Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays

Homepage

https://bioconductor.org/packages/3.10/bioc/html/crlmm.html

License

Artistic-2.0

Recipe

/bioconductor-crlmm/meta.yaml

Links

biotools: crlmm

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

package bioconductor-crlmm

Versions

1.44.0-0, 1.42.0-1, 1.40.0-0, 1.38.0-0, 1.36.0-0

Depends

• bioconductor-affyio >=1.56.0,<1.57.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-illuminaio >=0.28.0,<0.29.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-oligoclasses >=1.48.0,<1.49.0

• bioconductor-preprocesscore >=1.48.0,<1.49.0

• bioconductor-snpchip >=2.32.0,<2.33.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-beanplot

• r-ellipse

• r-ff

• r-foreach

• r-lattice

• r-matrixstats

• r-mvtnorm

• r-rcppeigen >=0.3.1.2.1

• r-vgam

Required By

• bioconductor-vanillaice

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-crlmm

and update with:

conda update bioconductor-crlmm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crlmm:<tag>

(see bioconductor-crlmm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-crlmm/README.html)