recipe bioconductor-cytoml

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CytoML.html

License

Artistic-2.0

Recipe

/bioconductor-cytoml/meta.yaml

package bioconductor-cytoml

(downloads) docker_bioconductor-cytoml

Versions

1.8.1-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-flowcore

>=1.48.0,<1.49.0

Depends bioconductor-flowutils

>=1.46.0,<1.47.0

Depends bioconductor-flowworkspace

>=3.30.0,<3.31.0

Depends bioconductor-ggcyto

>=1.10.0,<1.11.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-ncdfflow

>=2.28.0,<2.29.0

Depends bioconductor-opencyto

>=1.20.0,<1.21.0

Depends bioconductor-rbgl

>=1.58.0,<1.59.0

Depends bioconductor-rgraphviz

>=2.26.0,<2.27.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-base64enc

Depends r-data.table

Depends r-jsonlite

Depends r-plyr

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cytoml

and update with:

conda update bioconductor-cytoml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cytoml:<tag>

(see bioconductor-cytoml/tags for valid values for <tag>)