recipe bioconductor-cytoml

A GatingML Interface for Cross Platform Cytometry Data Sharing

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CytoML.html

License:

file LICENSE

Recipe:

/bioconductor-cytoml/meta.yaml

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

package bioconductor-cytoml

Versions:

2.6.0-2,  2.6.0-1,  2.6.0-0,  2.4.0-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.0.0-0,  1.12.0-0, 

2.6.0-2,  2.6.0-1,  2.6.0-0,  2.4.0-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.0.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0

Depends:

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-cytolib >=2.6.0,<2.7.0

• bioconductor-flowcore >=2.6.0,<2.7.0

• bioconductor-flowworkspace >=4.6.0,<4.7.0

• bioconductor-ggcyto >=1.22.0,<1.23.0

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-opencyto >=2.6.0,<2.7.0

• bioconductor-rbgl >=1.70.0,<1.71.0

• bioconductor-rgraphviz >=2.38.0,<2.39.0

• bioconductor-rhdf5lib >=1.16.0,<1.17.0

• bioconductor-rprotobuflib >=2.6.0,<2.7.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• libxml2 >=2.9.14,<2.10.0a0

• r-base >=4.1,<4.2.0a0

• r-base64enc

• r-bh >=1.62.0-1

• r-corpcor

• r-data.table

• r-dplyr

• r-jsonlite

• r-lattice

• r-plyr

• r-rcpp

• r-rcpparmadillo

• r-rcppparallel >=4.4.2-1

• r-runit

• r-tibble

• r-xml

• r-xml2

• r-yaml

Required By:

• bioconductor-flowsom

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cytoml

and update with:

conda update bioconductor-cytoml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cytoml:<tag>

(see bioconductor-cytoml/tags for valid values for <tag>)

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