recipe bioconductor-cytoml

A GatingML Interface for Cross Platform Cytometry Data Sharing

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CytoML.html

License

file LICENSE

Recipe

/bioconductor-cytoml/meta.yaml

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

package bioconductor-cytoml

Versions

2.0.0-0, 1.12.0-0, 1.10.0-1, 1.8.1-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-cytolib >=2.0.0,<2.1.0

• bioconductor-flowcore >=2.0.0,<2.1.0

• bioconductor-flowworkspace >=4.0.0,<4.1.0

• bioconductor-ggcyto >=1.16.0,<1.17.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-opencyto >=2.0.0,<2.1.0

• bioconductor-rbgl >=1.64.0,<1.65.0

• bioconductor-rgraphviz >=2.32.0,<2.33.0

• bioconductor-rhdf5lib >=1.10.0,<1.11.0

• bioconductor-rprotobuflib >=2.0.0,<2.1.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.5.0

• libxml2 >=2.9.10,<2.10.0a0

• r-base >=4.0,<4.1.0a0

• r-base64enc

• r-bh >=1.62.0-1

• r-corpcor

• r-data.table

• r-dplyr

• r-jsonlite

• r-lattice

• r-plyr

• r-rcpp

• r-rcpparmadillo

• r-rcppparallel >=4.4.2-1

• r-runit

• r-tibble

• r-xml

• r-yaml

Required By

• bioconductor-flowsom

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cytoml

and update with:

conda update bioconductor-cytoml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cytoml:<tag>

(see bioconductor-cytoml/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cytoml/README.html)