recipe bioconductor-cytoml

A GatingML Interface for Cross Platform Cytometry Data Sharing

Homepage

https://bioconductor.org/packages/3.13/bioc/html/CytoML.html

License

file LICENSE

Recipe

/bioconductor-cytoml/meta.yaml

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

package bioconductor-cytoml

Versions

2.4.0-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.0.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-cytolib >=2.4.0,<2.5.0

• bioconductor-flowcore >=2.4.0,<2.5.0

• bioconductor-flowworkspace >=4.4.0,<4.5.0

• bioconductor-ggcyto >=1.20.0,<1.21.0

• bioconductor-graph >=1.70.0,<1.71.0

• bioconductor-opencyto >=2.4.0,<2.5.0

• bioconductor-rbgl >=1.68.0,<1.69.0

• bioconductor-rgraphviz >=2.36.0,<2.37.0

• bioconductor-rhdf5lib >=1.14.0,<1.15.0

• bioconductor-rprotobuflib >=2.4.0,<2.5.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• libxml2 >=2.9.12,<2.10.0a0

• r-base >=4.1,<4.2.0a0

• r-base64enc

• r-bh >=1.62.0-1

• r-corpcor

• r-data.table

• r-dplyr

• r-jsonlite

• r-lattice

• r-plyr

• r-rcpp

• r-rcpparmadillo

• r-rcppparallel >=4.4.2-1

• r-runit

• r-tibble

• r-xml

• r-xml2

• r-yaml

Required By

• bioconductor-flowsom

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cytoml

and update with:

conda update bioconductor-cytoml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cytoml:<tag>

(see bioconductor-cytoml/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cytoml/README.html)