recipe bioconductor-cytoml

A GatingML Interface for Cross Platform Cytometry Data Sharing

Homepage

https://bioconductor.org/packages/3.10/bioc/html/CytoML.html

License

Artistic-2.0

Recipe

/bioconductor-cytoml/meta.yaml

Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.

package bioconductor-cytoml

Versions

1.12.0-0, 1.10.0-1, 1.8.1-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-cytolib >=1.8.0,<1.9.0

• bioconductor-flowcore >=1.52.0,<1.53.0

• bioconductor-flowworkspace >=3.34.0,<3.35.0

• bioconductor-ggcyto >=1.14.0,<1.15.0

• bioconductor-graph >=1.64.0,<1.65.0

• bioconductor-ncdfflow >=2.32.0,<2.33.0

• bioconductor-opencyto >=1.24.0,<1.25.0

• bioconductor-rbgl >=1.62.0,<1.63.0

• bioconductor-rgraphviz >=2.30.0,<2.31.0

• bioconductor-rprotobuflib >=1.8.0,<1.9.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• libxml2 >=2.9.10,<2.10.0a0

• r-base >=3.6,<3.7.0a0

• r-base64enc

• r-bh >=1.62.0-1

• r-corpcor

• r-data.table

• r-dplyr

• r-jsonlite

• r-lattice

• r-plyr

• r-rcpp

• r-rcppparallel

• r-runit

• r-xml

• r-yaml

Required By

• bioconductor-flowsom

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cytoml

and update with:

conda update bioconductor-cytoml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cytoml:<tag>

(see bioconductor-cytoml/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cytoml/README.html)