bioconductor-dada2

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The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and genus-species assignment by exact matching.

Home http://bioconductor.org/packages/3.6/bioc/html/dada2.html
Versions 0.10.0, 0.10.1, 0.10.3, 0.10.4, 0.99.10, 1.0.3, 1.2, 1.4, 1.4.0, 1.6.0
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dada2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dada2

and update with:

conda update bioconductor-dada2

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dada2.