recipe bioconductor-ddct

The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ddCt.html

License:

LGPL-3

Recipe:

/bioconductor-ddct/meta.yaml

Links:

biotools: ddct, doi: 10.1038/nmeth.3252

The Delta-Delta-Ct (ddCt) Algorithm is an approximation method to determine relative gene expression with quantitative real-time PCR (qRT-PCR) experiments. Compared to other approaches, it requires no standard curve for each primer-target pair, therefore reducing the working load and yet returning accurate enough results as long as the assumptions of the amplification efficiency hold. The ddCt package implements a pipeline to collect, analyse and visualize qRT-PCR results, for example those from TaqMan SDM software, mainly using the ddCt method. The pipeline can be either invoked by a script in command-line or through the API consisting of S4-Classes, methods and functions.

package bioconductor-ddct

(downloads) docker_bioconductor-ddct

Versions:
1.54.0-01.50.0-01.48.0-01.46.0-11.46.0-01.44.0-01.42.0-01.40.0-11.38.0-0

1.54.0-01.50.0-01.48.0-01.46.0-11.46.0-01.44.0-01.42.0-01.40.0-11.38.0-01.36.0-01.34.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ddct

and update with:

conda update bioconductor-ddct

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ddct:<tag>

(see bioconductor-ddct/tags for valid values for <tag>)

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