recipe bioconductor-decomptumor2sig

Decomposition of individual tumors into mutational signatures by signature refitting

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/decompTumor2Sig.html

License:

GPL-2

Recipe:

/bioconductor-decomptumor2sig/meta.yaml

Uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

package bioconductor-decomptumor2sig

(downloads) docker_bioconductor-decomptumor2sig

Versions:

2.14.0-02.10.0-02.8.0-02.6.0-12.6.0-02.4.0-02.2.0-02.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-decomptumor2sig

and update with:

conda update bioconductor-decomptumor2sig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-decomptumor2sig:<tag>

(see bioconductor-decomptumor2sig/tags for valid values for <tag>)

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