recipe bioconductor-delayedmatrixstats

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Homepage

https://bioconductor.org/packages/3.12/bioc/html/DelayedMatrixStats.html

License

MIT + file LICENSE

Recipe

/bioconductor-delayedmatrixstats/meta.yaml

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

package bioconductor-delayedmatrixstats

Versions

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-1,  1.4.0-0,  1.2.0-0

Depends

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-delayedarray >=0.16.0,<0.17.0

• bioconductor-hdf5array >=1.18.0,<1.19.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-matrixgenerics >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-sparsematrixstats >=1.2.0,<1.3.0

• r-base >=4.0,<4.1.0a0

• r-matrix

• r-matrixstats >=0.56.0

Required By

• bioconductor-batchelor

• bioconductor-weitrix

• bioconductor-glmgampoi

• bioconductor-minfi

• r-monocle3

• bioconductor-bsseq

• r-garnett

• bioconductor-singlecelltk

• bioconductor-scater

• bioconductor-singler

• bioconductor-scuttle

• bioconductor-scran

• bioconductor-celldex

• bioconductor-fraser

• bioconductor-methrix

• bioconductor-pcatools

• bioconductor-methylsig

• bioconductor-biscuiteer

• bioconductor-dmrseq

• bioconductor-scmerge

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-delayedmatrixstats

and update with:

conda update bioconductor-delayedmatrixstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-delayedmatrixstats:<tag>

(see bioconductor-delayedmatrixstats/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-delayedmatrixstats/README.html)