recipe bioconductor-demixt

Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DeMixT.html

License:

GPL-3

Recipe:

/bioconductor-demixt/meta.yaml

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

package bioconductor-demixt

(downloads) docker_bioconductor-demixt

Versions:
1.14.0-01.10.0-21.10.0-11.10.0-01.8.0-01.6.0-11.6.0-01.4.0-01.2.0-0

1.14.0-01.10.0-21.10.0-11.10.0-01.8.0-01.6.0-11.6.0-01.4.0-01.2.0-01.0.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-demixt

and update with:

conda update bioconductor-demixt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-demixt:<tag>

(see bioconductor-demixt/tags for valid values for <tag>)

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