recipe bioconductor-derfinder

Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/derfinder.html

License:

Artistic-2.0

Recipe:

/bioconductor-derfinder/meta.yaml

Links:

biotools: derfinder

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

package bioconductor-derfinder

(downloads) docker_bioconductor-derfinder

Versions:
1.32.0-01.28.0-01.26.0-01.24.2-01.24.0-01.22.0-01.20.0-01.18.3-01.16.1-0

1.32.0-01.28.0-01.26.0-01.24.2-01.24.0-01.22.0-01.20.0-01.18.3-01.16.1-01.14.0-01.12.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-derfinder

and update with:

conda update bioconductor-derfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-derfinder:<tag>

(see bioconductor-derfinder/tags for valid values for <tag>)

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