recipe bioconductor-deseq2

Differential gene expression analysis based on the negative binomial distribution

Homepage

https://bioconductor.org/packages/3.12/bioc/html/DESeq2.html

License

LGPL (>= 3)

Recipe

/bioconductor-deseq2/meta.yaml

Links

biotools: deseq2, doi: 10.1186/s13059-014-0550-8, usegalaxy-eu: deseq2

Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

package bioconductor-deseq2

(downloads) docker_bioconductor-deseq2

Versions
1.30.0-01.28.0-01.26.0-01.24.0-11.22.1-01.20.0-01.18.1-11.18.0-01.16.1-3

1.30.0-01.28.0-01.26.0-01.24.0-11.22.1-01.20.0-01.18.1-11.18.0-01.16.1-31.16.1-21.16.1-01.14.1-01.12.4-51.12.4-41.12.4-31.12.4-21.12.4-11.10.1-01.10.0-11.10.0-01.8.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-deseq2

and update with:

conda update bioconductor-deseq2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deseq2:<tag>

(see bioconductor-deseq2/tags for valid values for <tag>)