- recipe bioconductor-deseq2
Differential gene expression analysis based on the negative binomial distribution
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/DESeq2.html
- License:
LGPL (>= 3)
- Recipe:
- Links:
biotools: deseq2, doi: 10.1186/s13059-014-0550-8, usegalaxy-eu: deseq2
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.
- package bioconductor-deseq2¶
-
- Versions:
1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.1-0
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.1-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.1-0
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.1-0
,1.20.0-0
,1.18.1-1
,1.18.0-0
,1.16.1-3
,1.16.1-2
,1.16.1-0
,1.14.1-0
,1.12.4-5
,1.12.4-4
,1.12.4-3
,1.12.4-2
,1.12.4-1
,1.10.1-0
,1.10.0-1
,1.10.0-0
,1.8.2-0
- Depends:
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-genefilter
>=1.76.0,<1.77.0
bioconductor-geneplotter
>=1.72.0,<1.73.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-rcpp
>=0.11.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-deseq2
and update with:
conda update bioconductor-deseq2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-deseq2:<tag>
(see bioconductor-deseq2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-deseq2/README.html)