recipe bioconductor-dexma

Differential Expression Meta-Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DExMA.html

License:

GPL-2

Recipe:

/bioconductor-dexma/meta.yaml

performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

package bioconductor-dexma

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-dexmadata >=1.6.0,<1.7.0

• bioconductor-geoquery >=2.66.0,<2.67.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-snpstats >=1.48.0,<1.49.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-bnstruct

• r-pheatmap

• r-plyr

• r-rcolorbrewer

• r-scales

• r-swamp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dexma

and update with:

conda update bioconductor-dexma

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dexma:<tag>

(see bioconductor-dexma/tags for valid values for <tag>)

Download stats

Link to this page

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