-
recipe
bioconductor-diffbind
¶ Differential Binding Analysis of ChIP-Seq Peak Data
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/DiffBind.html
- License
Artistic-2.0
- Recipe
- Links
biotools: diffbind
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
-
package
bioconductor-diffbind
¶ -
- Versions
2.14.0-0, 2.12.0-1, 2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.6-0, 2.6.5-0, 2.6.0-0, 2.4.8-16, 2.2.12-1, 2.2.12-0, 2.0.9-3, 2.0.9-2, 1.16.3-0
- Depends
bioconductor-biocparallel >=1.20.0,<1.21.0
bioconductor-deseq2 >=1.26.0,<1.27.0
bioconductor-edger >=3.28.0,<3.29.0
bioconductor-genomicalignments >=1.22.0,<1.23.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-rhtslib >=1.18.0,<1.19.0
bioconductor-rsamtools >=2.2.0,<2.3.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
bioconductor-systempiper >=1.20.0,<1.21.0
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-diffbind
and update with:
conda update bioconductor-diffbind
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffbind:<tag>
(see bioconductor-diffbind/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffbind/README.html)