Package Recipe 'bioconductor-diffbind'

recipe bioconductor-diffbind

Differential Binding Analysis of ChIP-Seq Peak Data

Homepage: https://bioconductor.org/packages/3.11/bioc/html/DiffBind.html
License: Artistic-2.0
Recipe: /bioconductor-diffbind/meta.yaml
Links: biotools: diffbind

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

package bioconductor-diffbind¶

Versions

2.16.0-0, 2.14.0-0, 2.12.0-1, 2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.6-0, 2.6.5-0, 2.6.0-0,

2.16.0-0, 2.14.0-0, 2.12.0-1, 2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.6-0, 2.6.5-0, 2.6.0-0, 2.4.8-16, 2.2.12-1, 2.2.12-0, 2.0.9-3, 2.0.9-2, 1.16.3-0

Depends

bioconductor-biocparallel >=1.22.0,<1.23.0
bioconductor-deseq2 >=1.28.0,<1.29.0
bioconductor-edger >=3.30.0,<3.31.0
bioconductor-genomicalignments >=1.24.0,<1.25.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-limma >=3.44.0,<3.45.0
bioconductor-rhtslib >=1.20.0,<1.21.0
bioconductor-rsamtools >=2.4.0,<2.5.0
bioconductor-s4vectors >=0.26.0,<0.27.0
bioconductor-summarizedexperiment >=1.18.0,<1.19.0
bioconductor-systempiper >=1.22.0,<1.23.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=7.3.0
liblapack >=3.8.0,<3.9.0a0
libstdcxx-ng >=7.3.0
r-amap
r-base >=4.0,<4.1.0a0
r-dplyr
r-ggplot2
r-ggrepel
r-gplots
r-lattice
r-locfit
r-rcolorbrewer
r-rcpp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffbind

and update with:

conda update bioconductor-diffbind

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffbind:<tag>

(see bioconductor-diffbind/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-diffbind/README.html)