-
recipe
bioconductor-diffbind¶ Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/DiffBind.html
- License
Artistic-2.0
- Recipe
- Links
biotools: diffbind
-
package
bioconductor-diffbind¶ 
- Versions
2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.6-0, 2.6.5-0, 2.6.0-0, 2.4.8-16, 2.2.12-1, 2.2.12-0, 2.0.9-3, 2.0.9-2, 1.16.3-0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-deseq2
>=1.22.0,<1.23.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-genomicalignments
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends bioconductor-systempiper
>=1.16.0,<1.17.0
- Depends bioconductor-zlibbioc
>=1.28.0,<1.29.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-amap
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-dplyr
- Depends r-ggplot2
- Depends r-ggrepel
- Depends r-gplots
- Depends r-lattice
- Depends r-locfit
- Depends r-rcolorbrewer
- Depends r-rcpp
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-diffbind
and update with:
conda update bioconductor-diffbind
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffbind:<tag>
(see bioconductor-diffbind/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffbind/README.html)