recipe bioconductor-diffcoexp

Differential Co-expression Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/diffcoexp.html

License:

GPL (>2)

Recipe:

/bioconductor-diffcoexp/meta.yaml

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

package bioconductor-diffcoexp

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-diffcorr

• r-igraph

• r-psych

• r-wgcna

Required By:

• r-easydifferentialgenecoexpression

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-diffcoexp

and update with:

conda update bioconductor-diffcoexp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffcoexp:<tag>

(see bioconductor-diffcoexp/tags for valid values for <tag>)

Download stats

Link to this page

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