-
recipe
bioconductor-diffhic¶ Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/diffHic.html
- License
GPL-3
- Recipe
-
package
bioconductor-diffhic¶ 
- Versions
1.14.0-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-bsgenome
>=1.50.0,<1.51.0
- Depends bioconductor-csaw
>=1.16.0,<1.17.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-interactionset
>=1.10.0,<1.11.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-rhdf5
>=2.26.0,<2.27.0
- Depends bioconductor-rhtslib
>=1.14.0,<1.15.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-rtracklayer
>=1.42.0,<1.43.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends bioconductor-zlibbioc
>=1.28.0,<1.29.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-locfit
- Depends r-rcpp
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-diffhic
and update with:
conda update bioconductor-diffhic
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffhic:<tag>
(see bioconductor-diffhic/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffhic/README.html)