recipe bioconductor-diffhic

Differential Analyis of Hi-C Data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/diffHic.html

License

GPL-3

Recipe

/bioconductor-diffhic/meta.yaml

Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.

package bioconductor-diffhic

(downloads) docker_bioconductor-diffhic

Versions

1.18.0-0, 1.16.0-1, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffhic

and update with:

conda update bioconductor-diffhic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffhic:<tag>

(see bioconductor-diffhic/tags for valid values for <tag>)