recipe bioconductor-dmrcaller

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DMRcaller.html

License

GPL-3

Recipe

/bioconductor-dmrcaller/meta.yaml

package bioconductor-dmrcaller

(downloads) docker_bioconductor-dmrcaller

Versions

1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dmrcaller

and update with:

conda update bioconductor-dmrcaller

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrcaller:<tag>

(see bioconductor-dmrcaller/tags for valid values for <tag>)