- recipe bioconductor-dmrcate
Methylation array and sequencing spatial analysis methods
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DMRcate.html
- License:
file LICENSE
- Recipe:
- Links:
biotools: dmrcate
De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.
- package bioconductor-dmrcate¶
-
- Versions:
2.12.0-0
,2.6.0-0
,2.4.1-0
,2.4.0-0
,2.2.0-0
,2.0.0-0
,1.20.0-1
,1.18.0-0
,1.16.0-0
,2.12.0-0
,2.6.0-0
,2.4.1-0
,2.4.0-0
,2.2.0-0
,2.0.0-0
,1.20.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends:
bioconductor-bsseq
>=1.34.0,<1.35.0
bioconductor-dss
>=2.46.0,<2.47.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-minfi
>=1.44.0,<1.45.0
bioconductor-missmethyl
>=1.32.0,<1.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dmrcate
and update with:
conda update bioconductor-dmrcate
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dmrcate:<tag>
(see bioconductor-dmrcate/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dmrcate/README.html)