Package Recipe 'bioconductor-dmrcate'

recipe bioconductor-dmrcate

Methylation array and sequencing spatial analysis methods

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/DMRcate.html
License:: file LICENSE
Recipe:: /bioconductor-dmrcate/meta.yaml
Links:: biotools: dmrcate

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

package bioconductor-dmrcate¶

Versions:

2.12.0-0, 2.6.0-0, 2.4.1-0, 2.4.0-0, 2.2.0-0, 2.0.0-0, 1.20.0-1, 1.18.0-0, 1.16.0-0,

2.12.0-0, 2.6.0-0, 2.4.1-0, 2.4.0-0, 2.2.0-0, 2.0.0-0, 1.20.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends:

bioconductor-bsseq >=1.34.0,<1.35.0
bioconductor-dss >=2.46.0,<2.47.0
bioconductor-edger >=3.40.0,<3.41.0
bioconductor-experimenthub >=2.6.0,<2.7.0
bioconductor-genomeinfodb >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-gviz >=1.42.0,<1.43.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-limma >=3.54.0,<3.55.0
bioconductor-minfi >=1.44.0,<1.45.0
bioconductor-missmethyl >=1.32.0,<1.33.0
bioconductor-s4vectors >=0.36.0,<0.37.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
r-base >=4.2,<4.3.0a0
r-plyr

Required By:

bioconductor-champ

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dmrcate

and update with:

conda update bioconductor-dmrcate

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrcate:<tag>

(see bioconductor-dmrcate/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dmrcate/README.html)