recipe bioconductor-dmrscan

This package detects significant differentially methylated regions (for both qualitative and quantitative traits), using a scan statistic with underlying Poisson heuristics. The scan statistic will depend on a sequence of window sizes (# of CpGs within each window) and on a threshold for each window size. This threshold can be calculated by three different means: i) analytically using Siegmund et.al (2012) solution (preferred), ii) an important sampling as suggested by Zhang (2008), and a iii) full MCMC modeling of the data, choosing between a number of different options for modeling the dependency between each CpG.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DMRScan.html

License

GPL-3

Recipe

/bioconductor-dmrscan/meta.yaml

package bioconductor-dmrscan

(downloads) docker_bioconductor-dmrscan

Versions

1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dmrscan

and update with:

conda update bioconductor-dmrscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrscan:<tag>

(see bioconductor-dmrscan/tags for valid values for <tag>)