- recipe bioconductor-dnacopy
DNA copy number data analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DNAcopy.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: dnacopy, doi: 10.1038/nmeth.3252
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
- package bioconductor-dnacopy¶
-
- Versions:
1.72.0-1
,1.72.0-0
,1.68.0-2
,1.68.0-1
,1.68.0-0
,1.66.0-0
,1.64.0-1
,1.64.0-0
,1.62.0-0
,1.72.0-1
,1.72.0-0
,1.68.0-2
,1.68.0-1
,1.68.0-0
,1.66.0-0
,1.64.0-1
,1.64.0-0
,1.62.0-0
,1.60.0-0
,1.58.0-2
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-0
,1.50.1-0
,1.48.0-1
,1.48.0-0
,1.46.0-0
,1.44.0-0
- Depends:
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
libgfortran5
>=12.2.0
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dnacopy
and update with:
conda update bioconductor-dnacopy
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dnacopy:<tag>
(see bioconductor-dnacopy/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dnacopy/README.html)