bioconductor-doppelgangr

downloads

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and “smoking guns” - supposedly unique identifiers found in pData(eset).

Home http://bioconductor.org/packages/3.6/bioc/html/doppelgangR.html
Versions 1.4.1, 1.6.0
License GPL (>=2.0)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-doppelgangr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-doppelgangr

and update with:

conda update bioconductor-doppelgangr

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-doppelgangr.