recipe bioconductor-dose

Disease Ontology Semantic and Enrichment analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DOSE.html

License:

Artistic-2.0

Recipe:

/bioconductor-dose/meta.yaml

Links:

biotools: dose

This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.

package bioconductor-dose

Versions:

3.24.0-0,  3.20.0-0,  3.18.0-0,  3.16.0-1,  3.16.0-0,  3.14.0-0,  3.12.0-0,  3.10.2-0,  3.8.0-0, 

3.24.0-0,  3.20.0-0,  3.18.0-0,  3.16.0-1,  3.16.0-0,  3.14.0-0,  3.12.0-0,  3.10.2-0,  3.8.0-0,  3.6.1-0,  3.4.0-0,  3.2.0-0,  2.10.7-0,  2.10.6-0,  2.8.3-0,  2.8.2-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-gosemsim >=2.24.0,<2.25.0

• bioconductor-hdo.db >=0.99.0,<0.100.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-reshape2

Required By:

• bioconductor-clusterprofiler

• bioconductor-signaturesearch

• bioconductor-sctensor

• bioconductor-reactomepa

• bioconductor-meshes

• bioconductor-mirsponger

• bioconductor-moonlightr

• bioconductor-debrowser

• bioconductor-mageckflute

• bioconductor-gdcrnatools

• r-bcbiornaseq

• bioconductor-eegc

• bioconductor-rnaseqr

• bioconductor-pareg

• bioconductor-regenrich

• bioconductor-enrichplot

• bioconductor-pigengene

• bioconductor-biocancer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dose

and update with:

conda update bioconductor-dose

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dose:<tag>

(see bioconductor-dose/tags for valid values for <tag>)

Download stats

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