- recipe bioconductor-dropletutils
Utilities for Handling Single-Cell Droplet Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DropletUtils.html
- License:
GPL-3
- Recipe:
- Links:
biotools: DropletUtils
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.
- package bioconductor-dropletutils¶
-
- Versions:
1.18.0-1
,1.18.0-0
,1.14.2-1
,1.14.2-0
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.10.3-0
,1.10.0-0
,1.18.0-1
,1.18.0-0
,1.14.2-1
,1.14.2-0
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.10.3-0
,1.10.0-0
,1.8.0-0
,1.6.1-0
,1.4.2-0
,1.2.1-0
,1.0.3-0
- Depends:
bioconductor-beachmat
>=2.14.0,<2.15.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-rhdf5lib
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scuttle
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dropletutils
and update with:
conda update bioconductor-dropletutils
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dropletutils:<tag>
(see bioconductor-dropletutils/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dropletutils/README.html)