bioconductor-dss

downloads

DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.

Home http://bioconductor.org/packages/3.7/bioc/html/DSS.html
Versions 2.28.0, 2.26.0
License GPL
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dss
Links biotools: dss

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dss

and update with:

conda update bioconductor-dss

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dss.